Training materials
Contributors: Alvaro Gonzalez or Anna Syme or Björn Grüning or Cyril Pommier or Marie Crane or Software Carpentry or UC Davis Bioinformatics Core Training Page or cambiotraining
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hands-on tutorial
metaQuantome 1: Data creation
•• intermediateProteomics Proteogenomics Biodiversity Taxonomy microgalaxy -
hands-on tutorial
Peptide and Protein ID using SearchGUI and PeptideShaker
• beginnerProteomics DDA HeLa -
hands-on tutorial
Detection and quantitation of N-termini (degradomics) via N-TAILS
•• intermediateProteomics -
hands-on tutorial
Peptide and Protein ID using OpenMS tools
••• advancedProteomics DDA HeLa -
hands-on tutorial
Protein FASTA Database Handling
• beginnerProteomics DDA -
hands-on tutorial
Galaxy Database schema
• beginnerGalaxy Server administration -
hands-on tutorial
Connecting Galaxy to a compute cluster
• beginnerGalaxy Server administration ansible git-gat jobs -
hands-on tutorial
Galaxy Monitoring with Reports
• beginnerGalaxy Server administration ansible broken git-gat monitoring -
hands-on tutorial
Mass spectrometry imaging: Loading and exploring MSI data
• beginnerProteomics imaging mouse -
hands-on tutorial
Understanding Galaxy history system
• beginnerUsing Galaxy and Managing your Data