Training materials
Difficulty level: Intermediate
and Contributors: Alireza Khanteymoori or Lounès Chikhi or Sabine Österle or Sonika Tyagi or Timothy J. Griffin
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hands-on tutorial
metaQuantome 3: Taxonomy
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Taxonomy microgalaxy -
hands-on tutorial
Proteogenomics 1: Database Creation
•• intermediateProteomics proteogenomics -
hands-on tutorial
Proteogenomics 2: Database Search
•• intermediateProteomics proteogenomics -
hands-on tutorial
metaQuantome 2: Function
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics microgalaxy -
hands-on tutorial
metaQuantome 1: Data creation
•• intermediateProteomics Proteogenomics Biodiversity Taxonomy microgalaxy -
hands-on tutorial
Proteogenomics 3: Novel peptide analysis
•• intermediateProteomics proteogenomics -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Documentation, Exercise, Handout, Scripts
PGDH19 - Population Genetics Demographic History: model-based approaches (2019)
•• intermediatePopulation Genomics Phylogenetics -
Documentation, Exercise, Handout, Scripts
PGDH18 - Population Genetics and Demographic History: model-based approaches (2018)
•• intermediatePopulation Genomics Phylogenetics