Training materials
Difficulty level: Intermediate
and Contributors: Alexandre Cormier or Björn Grüning or Celia van Gelder or Cristóbal Gallardo or Daniel Faria or Dr. Manuel Corpas or Florian Christoph Sigloch or James Johnson or Jamie Edwards or Jordi Rambla or Manimozhiyan Arumugam or Marek Vrbacky or Nils Peder Willassen
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1 -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
VGP assembly pipeline - short version
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Secretome Prediction
•• intermediateProteomics human work-in-progress -
hands-on tutorial
Proteogenomics 1: Database Creation
•• intermediateProteomics proteogenomics -
hands-on tutorial
Proteogenomics 2: Database Search
•• intermediateProteomics proteogenomics -
hands-on tutorial
Proteogenomics 3: Novel peptide analysis
•• intermediateProteomics proteogenomics
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