Training materials
Scientific topics: Proteomics or Software engineering
and Contributors: Federico Bianchini or Björn Grüning or Lydie Lane or Markus Englund or Mikko Rautiainen or Sonika Tyagi
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lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
e-learning
neXtProt : Exploring human proteins
• beginnerProteins Proteomics Proteins (proteins) human -
hands-on tutorial
JavaScript plugins
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Galaxy Webhooks
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Hands-on for 'Label-free versus Labelled - How to Choose Your Quantitation Method' tutorial
• beginnerproteomics DDA -
hands-on tutorial
Hands-on for 'Secretome Prediction' tutorial
•• intermediateproteomics human -
hands-on tutorial
Hands-on for 'Peptide and Protein Quantification via Stable Isotope Labelling (SIL)' tutorial
••• advancedproteomics DDA SILAC -
hands-on tutorial
Hands-on for 'Peptide and Protein ID using SearchGUI and PeptideShaker' tutorial
• beginnerproteomics DDA HeLa -
hands-on tutorial
Detection and quantitation of N-termini (degradomics) via N-TAILS
•• intermediateProteomics -
hands-on tutorial
Hands-on for 'Peptide and Protein ID using OpenMS tools' tutorial
••• advancedproteomics DDA HeLa