Training materials
Scientific topics: Proteomics
and Contributors: @posit-pbc or Anton Nekrutenko or Clair Castle or Dr. Iain Milne or Florian Christoph Sigloch or James Johnson or Joachim Wolff or Mehmet Tekman
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hands-on tutorial
Secretome Prediction
•• intermediateProteomics human work-in-progress -
hands-on tutorial
Label-free versus Labelled - How to Choose Your Quantitation Method
• beginnerProteomics DDA -
hands-on tutorial
Proteogenomics 1: Database Creation
•• intermediateProteomics proteogenomics -
hands-on tutorial
Proteogenomics 2: Database Search
•• intermediateProteomics proteogenomics -
hands-on tutorial
Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
••• advancedProteomics DDA SILAC -
hands-on tutorial
Peptide and Protein ID using SearchGUI and PeptideShaker
• beginnerProteomics DDA HeLa -
hands-on tutorial
Proteogenomics 3: Novel peptide analysis
•• intermediateProteomics proteogenomics -
hands-on tutorial
Detection and quantitation of N-termini (degradomics) via N-TAILS
•• intermediateProteomics -
hands-on tutorial
EncyclopeDIA
• beginnerProteomics DIA -
hands-on tutorial
Peptide and Protein ID using OpenMS tools
••• advancedProteomics DDA HeLa
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