Training materials
Scientific topics: Sample collections or Systems biology or Transcriptomics
and Content provider: Galaxy Training or SIB Swiss Institute of Bioinformatics
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e-learning
ISMARA: A tool to infer genome-wide regulatory interactions
• beginnerSystems biology Gene regulation Transcription factors and regulatory sites Computational modelling -
hands-on tutorial
Hands-on for 'Inferring trajectories using Monocle3' tutorial
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hands-on tutorial
Hands-on for 'Combining datasets after pre-processing' tutorial
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hands-on tutorial
Hands-on for 'Inferring Trajectories using Scanpy (Python)' tutorial
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hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
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hands-on tutorial
Visualization of RNA-Seq results with Volcano Plot
• beginnerTranscriptomics -
hands-on tutorial
Hands-on for 'Visualization of RNA-Seq results with Volcano Plot in R' tutorial
•• intermediatetranscriptomics interactive-tools -
hands-on tutorial
Hands-on for 'Pre-processing of 10X Single-Cell RNA Datasets' tutorial
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hands-on tutorial
Hands-on for 'Pre-processing of Single-Cell RNA Data' tutorial
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hands-on tutorial
Hands-on for 'Analysis of plant scRNA-Seq Data with Scanpy' tutorial