Training materials
Scientific topics: Biology or CWL or Computational chemistry or Structure prediction or Toxicology or Transcriptomics
and Authors: Pavankumar Videm or Stefano Mangiola
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slides
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics -
stemangiola/bioc_2020_tidytranscriptomics
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hands-on tutorial
RNA-RNA interactome data analysis
• beginnerTranscriptomics -
hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Clustering 3K PBMCs with Scanpy
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerTranscriptomics Single Cell paper-replication plants -
hands-on tutorial
Small Non-coding RNA Clustering using BlockClust
• beginnerTranscriptomics -
hands-on tutorial
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq