Training materials
Authors: Jared Simpson or Jessica Kirkpatrick krkptrc2@illinois.edu or Mark Fernandes or Martin Morgan or Stéphanie Robin or Tuur Muyldermans or pajanne
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mtmorgan/HCABiocTraining
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hands-on tutorial
Hands-on for 'Long non-coding RNAs (lncRNAs) annotation with FEELnc' tutorial
•• intermediategenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Genome assembly using PacBio data' tutorial
•• intermediateassembly pacbio -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
slides
Quality Control
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Training materials
Containers & Workflow pipelines workshop
•• intermediateContainers Nextflow -
Presentation, course materials
Introduction to Nextflow workshop
• beginnerWorkflows Nextflow DSL2