hands-on tutorial
Long non-coding RNAs (lncRNAs) annotation with FEELnc
The questions this addresses are:
- How to annotate lncRNAs with FEELnc?
- How to classify lncRNAs according to their localisation and direction of transcription of proximal RNA transcripts?
- How to update genome annotation with these annotated lncRNAs?
The objectives are:
- Load data (genome assembly, annotation and mapped RNASeq) into Galaxy
- Perform a transcriptome assembly with StringTie
- Annotate lncRNAs with FEELnc
- Classify lncRNAs according to their location
- Update genome annotation with lncRNAs
Licence: Creative Commons Attribution 4.0 International
Keywords: Genome Annotation, eukaryote
Target audience: Students
Resource type: hands-on tutorial
Version: 9
Status: Active
Prerequisites:
- Genome annotation with Funannotate
- Introduction to Galaxy Analyses
Learning objectives:
Load data (genome assembly, annotation and mapped RNASeq) into Galaxy
- Perform a transcriptome assembly with StringTie
- Annotate lncRNAs with FEELnc
- Classify lncRNAs according to their location
- Update genome annotation with lncRNAs
Date modified: 2024-09-03
Date published: 2022-09-23
Contributors: Anthony Bretaudeau
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