Training materials
Difficulty level: Intermediate
and Authors: Dave Clements or Maria Lehtivaara or Mikael Linden or Wolfgang Maier or slugger70
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hands-on tutorial
Avian influenza viral strain analysis from gene segment sequencing data
•• intermediateGenetic variation Variant Analysis one-health virology -
hands-on tutorial
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• intermediateGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly covid19 -
hands-on tutorial
Removal of human reads from SARS-CoV-2 sequencing data
•• intermediateSequence analysis covid19 -
Documentation, Presentation
ELIXIR AAI Engagement Meetings Materials
•• intermediateComputer science AAI IAM Authentication authorisation -
Training materials, Video
GA4GH Passports and ELIXIR AAI
•• intermediateAAI GA4GH Passports Auhtorisation -
Webinar, Presentation, Documentation
Integrating to ELIXIR AAI -- instructions for developers
•• intermediateComputer science AAI IAM Authentication authorisation -
Training on integration of services to ELIXIR AAI
•• intermediateAAI authentication Shibboleth