Training materials
Authors: Bernardo Clavijo or Eija Korpelainen or Florian-H-Lab or Friederike Ehrhart or Jared Simpson or Julie Sullivan or Maria Victoria . or NickSto or Philip Krauss or nekrut
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Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Triplestore Ontology -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Tutorial
Rare Disease Pathway and Network Analysis
• beginnerPathway analysis Biological networks Network analysis Pathways -
course materials, Training materials, Slides, Video
RNA-seq data analysis using Chipster
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course materials, Video
Single cell RNA-seq data analysis with Chipster
• beginnerRNA-Seq RNA-Seq Single Cell technologies scRNA-seq -
Tutorial
Transcriptomics - CLIP-Seq data analysis from pre-processing to motif detection
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Tutorial
InterMine user tutorial
• beginnerData querying Data analysis Data download FAIR -
Tutorial
How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene
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Tutorial
Data Manipulation - Collections: Multisample Analysis
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Tutorial
Data Manipulation - Collections: Using dataset collection