Training materials
Difficulty level: Beginner
and Authors: Anne Fouilloux or Bruno Gaeta or Ettore Murabito or Jonathan Karr or Lars Juhl Jensen or Martin Morgan or Nicolas Delhomme @delhomme or Obi Griffith or Yo Yehudi or blankclemens
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Video
Parameter Scanning and Sampling in COPASI
• beginnerSimulation experiment Modelling and simulation Analysis Visualisation SystemsBiology ComputationalBiology Computational modelling Kinetic modeling COPASI -
Video
Metabolic Control Analysis in COPASI
• beginnerSimulation experiment Systems biology Modelling and simulation Analysis Visualisation SystemsBiology ComputationalBiology Computational modelling Kinetic modeling COPASI -
hands-on tutorial
How to reproduce published Galaxy analyses
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
Galaxy Basics for everyone
• beginnerIntroduction to Galaxy Analyses -
Tutorial, Documentation
runBioSimulations tutorial and help
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations SBML BNGL -
Tutorial
Datanator tutorial
• beginnerMolecular biology Cell biology Systems biology Bioinformatics Omics Query and retrieval Filtering genomics Proteomics transcriptomics Metabolomics reaction kinetics Kinetic modeling meta analysis -
Tutorial
InterMine user tutorial
• beginnerData querying Data analysis Data download FAIR -
Documentation
InterMine user manual
• beginnerData querying data visualization Data download FAIR -
STRING exercises
• beginnerBioinformatics Molecular interactions, pathways and networks Protein interactions