Training materials
Difficulty level: Intermediate
and Authors: Alexander Botzki or Baker Matthew or Jan Slifka or Javi Conejero or Maria Christina Maniou or Stéphanie Robin
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Tutorial
Tutorial on using existing PerMedCoE Building Blocks and workflows
•• intermediateBioinformatics Workflows Personalised medicine Building blocks -
Best Practices in Programming
•• intermediateprogramming reproducibility bernd rinn group -
hands-on tutorial
Hands-on for 'Long non-coding RNAs (lncRNAs) annotation with FEELnc' tutorial
•• intermediategenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
hands-on tutorial
Hands-on for 'Genome assembly using PacBio data' tutorial
•• intermediateassembly pacbio -
hands-on tutorial
Hands-on for 'Plotting in Python' tutorial
•• intermediatedata-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Advanced Python' tutorial
•• intermediatedata-science jupyter-notebook -
Tutorial
Tutorial on developing Building Blocks
•• intermediateBioinformatics Workflows Personalised medicine HPC building blocks -
Training materials
Containers & Workflow pipelines workshop
•• intermediateContainers Nextflow