Training materials
Difficulty level: Beginner
and Authors: Aidan Budd or Annabel Cansdale or Avans Hogeschool or Erwan Corre or Julie Sullivan or Laura Leroi
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course materials, Online material, Training materials
Cloud-SPAN Genomics
• beginnerBioinformatics Software engineering Genomics DNA polymorphism Workflows Data architecture, analysis and design Shell Command line Cloud computing HPC Data analysis High performance computing -
course materials, online course, Training materials
Cloud-SPAN Prenomics
• beginnerBioinformatics Software engineering Genomics Query and retrieval Data handling Cloud computing Shell Command line Amazon Web Services genomics HPC Data analysis bioinformatics -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'CLI basics' tutorial
• beginnerdata-science bash jupyter-notebook -
hands-on tutorial
Hands-on for 'Advanced SQL' tutorial
• beginnerdata-science SQL jupyter-notebook -
hands-on tutorial
Hands-on for 'Introduction to SQL' tutorial
• beginnerdata-science SQL jupyter-notebook -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
Tutorial
InterMine user tutorial
• beginnerData querying Data analysis Data download FAIR
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