Training materials
Authors: Anne Segonds-Pichon or Dave Clements or Denise Slenter or Malachi Griffith or Marius van den Beek or Sundeep Agarwal or Wendi Bacon
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slides
GO Enrichment Analysis on Single-Cell RNA-Seq Data
• beginnerSingle Cell -
slides
Single-cell Formats and Resources
• beginnerSingle Cell -
hands-on tutorial
Creating a Special Interest Group
• beginnerGalaxy Community Building -
hands-on tutorial
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
hands-on tutorial
Importing files from public atlases
• beginnerSingle Cell data import data management -
hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
16S Microbial Analysis with mothur (extended)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
hands-on tutorial
16S Microbial Analysis with mothur (short)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy