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Single-cell Formats and Resources

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Abstract

Breakdown of single-cell data

Questions this will address

  • What does single-cell data look like?
  • What are the common single-cell formats?
  • Where can public single-cell data be found?

Learning Objectives

  • Learn the basic structure of single-cell data
  • Be able to recognise different types of single-cell metadata
  • Learn the common data formats used for storing single-cell data
  • Become familiar with some popular sources for public single-cell data

Licence: Creative Commons Attribution 4.0 International

Keywords: Single Cell

Target audience: Students

Resource type: slides

Version: 4

Status: Active

Prerequisites:

  • An introduction to scRNA-seq data analysis
  • Introduction to Galaxy Analyses

Learning objectives:

  • Learn the basic structure of single-cell data
  • Be able to recognise different types of single-cell metadata
  • Learn the common data formats used for storing single-cell data
  • Become familiar with some popular sources for public single-cell data

Date modified: 2025-02-13

Date published: 2024-07-26

Authors: Morgan Howells

Contributors: Björn Grüning, Katarzyna Kamieniecka, Marisa Loach, Morgan Howells, Pavankumar Videm, Saskia Hiltemann, Teresa Müller, Wendi Bacon

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