Training materials
Authors: Anne Segonds-Pichon or Alexandre Cormier or Gildas Le Corguillé or Malachi Griffith or Mehmet Tekman or Mo Heydarian
and Contributors: Bérénice Batut or Erwan Corre
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hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Genome assembly using PacBio data' tutorial
•• intermediateassembly pacbio -
hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
Pre-processing of Single-Cell RNA Data
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Hands-on for 'Clustering 3K PBMCs with Scanpy' tutorial
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hands-on tutorial
Hands-on for 'Reference-based RNA-Seq data analysis' tutorial
• beginnertranscriptomics bulk rna-seq collections drosophila QC cyoa -
slides
Tool development and integration into Galaxy
• beginnerSoftware engineering Development in Galaxy -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly
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