GATK Best practices for variant discovery

ÔÇïIn the course of this workshop, we highlight key functionalities such as 

GVCF workflow for joint variant discovery in cohorts
RNAseq-specific processing
somatic variant discovery using MuTect2. 
capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery
the use of pipelining tools to assemble and execute GATK workflows.

Scientific topics: RNA-Seq

Target audience: Life Science Researchers, PhD students, beginner bioinformaticians, post-docs

Authors: Geraldine Van der Auwera

Remote created date: 2016-04-22

Remote updated date: 2017-10-09

GATK Best practices for variant discovery https://tess.elixir-europe.org/materials/gatk-best-practices-for-variant-discovery ÔÇïIn the course of this workshop, we highlight key functionalities such as  GVCF workflow for joint variant discovery in cohorts RNAseq-specific processing somatic variant discovery using MuTect2.  capabilities of the upcoming GATK version 4, including a new workflow for CNV discovery the use of pipelining tools to assemble and execute GATK workflows. RNA-Seq Life Science Researchers PhD students beginner bioinformaticians post-docs 2016-04-22 2017-10-09