Switzerland
Eukaryotic Genome Sequence Assembly and Annotation
A learning path set for Eukaryotic Genome Sequence Assembly and Annotation data management with 3 domains : FAIR essentials, genome assembly, and genome annotation.
Licence: Creative Commons Attribution 4.0 International
Keywords: Data management, Sequence assembly, Genomics, FAIR
Status: Under development
Learning objectives:
At the end of the learning path, researchers or data managers specialized in biodiversity genomics are able to :
- retrieve metadata for the biological materials of their interest
- retrieve unique identifiers for their samples from BioSamples
- retrieve metadata on omics experiments
- publish metadata on omics experiments in the recommended databases
- use tools to version their metadata curation before publication
- submit the raw data and the annotated genomes to ENA, the samples to BioSamples with the correct metadata
- analyze the data of the genome in reproducible way and manage the data in a FAIR way
People should be able to do genome assembly by themself (starting with raw data), and do the functional annotation of the genome that they obtain.
Data Management: Basics of the genome sequencing
• beginner 2 materialsIntroduction to genome sequencing
•• intermediate 1 materialEukaryotic Genome Assembly
••• advanced 2 materials-
e-learning
Genome Assembly Quality Control
•• intermediateSequence assembly Biodiversity Data quality management Assembly assembly biodiversity quality control -
Galaxy Introduction for Life Scientists
• beginnerbasic research experimental biology interoperability next generation sequencing reproducibility training michael stadler group
Eukaryotic Genome Annotation
••• advanced 0 materialsActivity log
