Learning path topics
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Module: Genome annotation
The generated contigs can be annotated to detect genes, potential plasmids, etc. This will help the AMR gene detection process, especially the verification and visualization
Time estimation: 3 hours
Learning objectives:
- Run a series of tool to annotate a draft bacterial genome for...
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Module: Species and contamination checking
Quality control and taxonomic assignation is useful in AMR detection to verify the quality of the data but also to check contamination and confirm species
Time estimation: 2 hours
Learning objectives:
- Run tools to evaluate sequencing data on quality and quantity
- Evaluate the output...