TeSS (Training eSupport System)

Topic

Module: Species and contamination checking

Quality control and taxonomic assignation is useful in AMR detection to verify the quality of the data but also to check contamination and confirm species

Time estimation: 2 hours

Learning objectives:

Run tools to evaluate sequencing data on quality and quantity
Evaluate the output of quality control tools
Improve the quality of sequencing data
Run a series of tool to identify species in bacterial isolate sequencing data
Visualize the species abundance

Keywords

illumina, bacteria, microgalaxy

Owner

philreeddata (Phil Reed)

Materials (1)

Showing 1 material

Filter

1

e-learning

Quality and contamination control in bacterial isolate using Illumina MiSeq Data

• beginner
Sequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy

Showing 0 events

Activity log

Topic

Module: Species and contamination checking

Keywords

Owner

Quality and contamination control in bacterial isolate using Illumina MiSeq Data