Learning path topics
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Module: AMR gene detection
AMR gene content can be assessed from the contigs to detect known resistance mechanisms and potentially identify novel mechanisms.
Time estimation: 2 hours
Learning objectives:
- Run a series of tool to assess the presence of antimicrobial resistance genes (ARG)
- Get information about...
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Module: Genome annotation
The generated contigs can be annotated to detect genes, potential plasmids, etc. This will help the AMR gene detection process, especially the verification and visualization
Time estimation: 3 hours
Learning objectives:
- Run a series of tool to annotate a draft bacterial genome for...