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- Module: AMR gene detection
Topic
Module: AMR gene detection
AMR gene content can be assessed from the contigs to detect known resistance mechanisms and potentially identify novel mechanisms.
Time estimation: 2 hours
Learning objectives:
- Run a series of tool to assess the presence of antimicrobial resistance genes (ARG)
- Get information about ARGs
- Visualize the ARGs and plasmid genes in their genomic context
Keywords
gmod, illumina, amr, one-health, jbrowse1, microgalaxy
