Date: 23 September 2020

This webinar will include a brief introduction to the GWAS Catalog, followed by hands-on demonstrations and exercises covering different methods for accessing GWAS Catalog data, focusing on the most common use-cases. This will include our web-based search interface, with a number of different tools for data access and visualisation, and download of filtered datasets. We will also briefly introduce and describe how to submit your own data. 

Contact: Ajay Mishra - trainonline@ebi.ac.uk

Keywords: MetaboLights: Metabolomics repository and reference database, Chemical Entities of Biological Interest, Cross domain (cross-domain), ChEBI, Metabolites, Molecular building blocks of life, Human Cell Atlas Data Coordination Platform, Cross domain (cross-domain), Single-cell transcriptomics, Molecular building blocks of life, HCA data portal, Complex Portal, Proteins (proteins), macromolecular assembly, Molecular building blocks of life, InterPro, Proteins (proteins), Molecular building blocks of life, Europe PubMed Central, Literature (literature), Open access, UniProt: The Universal Protein Resource, Proteins (proteins), Molecular building blocks of life, Protein Data Bank in Europe - Knowledge Base, Proteins (proteins), 3D structure, AlphaFold Database, Proteins (proteins), DeepMind, Artificial intelligence, AI, Structure prediction, Molecular building blocks of life, cancer, Boolean, Ensembl Genomes, DNA & RNA (dna-rna), Molecular building blocks of life, European Nucleotide Archive, DNA & RNA (dna-rna), Data archive, Raw sequencing data, Molecular building blocks of life, UniProt: The Universal Protein Resource, Proteins (proteins), RNAcentral, DNA & RNA (dna-rna), Non-coding RNA, ncRNA, Molecular building blocks of life, GPU, Data protection, Job dispatcher, Bioimage analysis resource, GPU, Data protection, Accessibility, Missense variation, Biostatistics, Rfam, DNA & RNA (dna-rna), non-coding RNA, Infernal software, Sequence annotation, Root microbiome, Abiotic stress, land management, Plant genotype, Plant webinar series, HPC, Data protection, database development, cross-linked databases, Plant database, Plant webinar series, data infrastructure, Plant webinar series, Plant breeding, Data standards, data managemnet, data sharing, Plant webinar series, Hyb-Seq method, Flowering plants, Artificial intelligence, Crop improvement, Pangenomics, Pangenomes, Plant webinar series, Virtual humans, Drug-target identification, plant-microbe interactions, Plant webinar series, Spatial transcriptomics, Plant research, Europe PubMed Central, Open Targets Platform, Drug targets, Machine learning, Plant webinar series, Mathematical modelling, plant science, Data integration, Virtual humans, plant-environment interaction, Plant webinar series, Phenotyping, field phenotyping, Deep phenotyping, EOSC-Life, NHGRI-EBI GWAS Catalog, clinical data, genome-wide association, UniProt: The Universal Protein Resource, Proteins (proteins), Proteomics, API, Proteomes, Peptide search, Ensembl Genomes, Plant webinar series, Plant research, plants, European Variation Archive, EVA, Variant clusters, Variant data annotation, Constraint-based metabolic modelling, UniProt: The Universal Protein Resource, Proteins (proteins), UniProt knowledgebase, protein variant impact, disease-associated protein variants, Bioethics, FAIR principles, ELSI, cohort data, translational research, BioModels database, Mathematical modeling, Reproducibity, Systems biology models, workflows, federated analysis, polygenic risk scores, IntAct Molecular Interaction Database, PSICQUIC, IMEx, Complex portal, Agent-based modelling, Macrophages, Tumorigenesis, Ensembl, Europe PubMed Central, Literature (literature), Training (Training), On-demand, teaching, introduction, Building blocks, Data analysis, COSMIC, Cancer mutation, Somatic mutation, UniProt: The Universal Protein Resource, Proteins (proteins), UniRule, UniFIRE, ARBA, Protein annotation, ChEMBL: Bioactive data for drug discovery, Chemical compounds, drug-like molecules, Chemogenomics, UniProt: The Universal Protein Resource, MetaboLights: Metabolomics repository and reference database, Biocurator, Programming, Data management, Green Algorithms, Open data, Environmental impact, Carbon footprint, UniProt: The Universal Protein Resource, Proteins (proteins), Protein function, HPC workflows, Orchestrator, Gene expression (gene-expression), Chemosensitivity assay, Experimental protocols, Drug screening, MICHA, EOSC-Life, European Variation Archive, European Genome-phenome Archive, EVA, EGA, Open data, restricted access, UniProt: The Universal Protein Resource, Proteins (proteins), UniProt, Introduction, UniProtKB, Proteome, UniProt: The Universal Protein Resource, Protein Data Bank in Europe, Gene expression (gene-expression), genes, Proteins (proteins), Introductory, HPC, GDPR, Data security, Ensembl, Expression Atlas, Gene expression (gene-expression), genes, Introductory, UniProt: The Universal Protein Resource, Proteins (proteins), API, Programmatic access, UniProtKB, Proteomes, UniParc, UniRef, Pfam, InterPro, Proteins (proteins), protein sequence search, Domain architecture, Protein taxonomy, Cross domain (cross-domain), Introduction, Beginner, AlphaFold Database, Proteins (proteins), AI structure prediction, Cross domain (cross-domain), COVID-19, Coronavirus, COVID-19 Data Portal, Virology, EOSC-Life, Computational simulations, Signalling prior knowledge, Cancer therapy response, PRIDE: The Proteomics Identifications Database, Proteins (proteins), AlphaFold Database, Proteins (proteins), protein structure prediction, AI system, Competency framework, Computational simulations, Signalling prior knowledge, Cancer therapy response, Europe PubMed Central, Literature (literature), Publication, Journal club, Preprints, Protein Data Bank in Europe, Proteins (proteins), Aggregated view, Structural similarity, Proteins (proteins), PPI networks, Computational simulations, Cell signaling, UniProt: The Universal Protein Resource, Proteins (proteins), Malaria, Biological networks, Graph theory, Building biological networks, Europe PubMed Central, Literature (literature), Biocuration, Information Manager, Industry, DNA & RNA (dna-rna), Rare-variant, Variant association, SKAT, European Genome-phenome Archive, Sensitive data, Biocuration, Biocurator, Human cohort data, FAIR, Gene Ontology, International Mouse Phenotyping Consortium Portal, Biocuration, Biocurator, Biocurators, Biocuration, UniProt: The Universal Protein Resource, biocuration, programming skills, training, career development, Ensembl, Cell-level simulations, Personalised medicine, PerMedCoE, Single cell, NHGRI-EBI GWAS Catalog, Phenotype, Genome-Wide Association Studies, MetaboLights: Metabolomics repository and reference database, Ensembl, Genome, Cell-level simulations, Personalised medicine, PerMedCoE, Signaling networks, Cell-level simulations, Personalised medicine, PerMedCoE, BioImage Archive, Europe PubMed Central, Literature (literature), API, Programmatic access, REST, Funding, Cell-level simulations, Personalised medicine, PerMedCoE, ChEMBL: Bioactive data for drug discovery, UniChem: Chemical Structure Cross-referencing, Chemical biology (chemical-biology), Bioactivity data, Drug-like compounds, Programmatic access, API, Ensembl, DNA & RNA (dna-rna), Programmatic access, API, REST, Open access, FAIR, Europe PubMed Central, Literature (literature), Open access, Preprints, Cell-level simulations, BioStudies Database, EBI Search, Cross domain (cross-domain), Open access, Finding data, UniProt: The Universal Protein Resource, Proteins (proteins), World Sight Day, Eye development, Eye disease, Cross domain (cross-domain), Open access, Open software, IntAct Molecular Interaction Database, Complex Portal, Cross domain (cross-domain), Metadata, FAIR, GDPR, Open access, Europe PubMed Central, Literature (literature), Preprints, Web Services, Dbfetch, Database fetch, programmatic access, Cell-level simulations, Personalised medicine, PerMedCoE, API, Open Targets, AlphaFold Database, Proteins (proteins), Protein structure prediction, Colab notebooks, EBI Search, RESTful API, RESTful Web Services, Protein Data Bank in Europe, Proteins (proteins), PDBe, Ligand binding sites, InterPro, UniProt: The Universal Protein Resource, Protein families, Protein functional analysis, Protein sequences, Programmatic access, Europe PubMed Central, Literature (literature), Preprints, Biocuration, Data curation, DNA & RNA (dna-rna), Proteins (proteins), Biomolecular sequences, Reactome pathways database, ReactomeGSA, scRNA-seq, Multiomics, IntAct Molecular Interaction Database, Cytoscape, PSICQUIC, IMEx, Europe PubMed Central, Literature (literature), PsyArXiv, Psychology, Open Targets Platform, Drug targets, ChEMBL: Bioactive data for drug discovery, Chemical biology (chemical-biology), Bioactive data, Drug targets, Drug-like molecules, UniProt: The Universal Protein Resource, Proteins (proteins), BioStudies Database, Literature (literature), Biological studies, Literature, Open access, UniProt: The Universal Protein Resource, Proteins (proteins), Neurodegenerative disorders, UniProtKB, Rfam, RNA families, FAIR, Data management, Data sharing, UniProt: The Universal Protein Resource, Proteins (proteins), UniProtKB, Metabolites, Protein Data Bank in Europe, Proteins (proteins), Molecular visualisation, Molecular structures, Electron density maps, PDBe, FAIR, Data sharing, Data management, EBI BioSamples Database, Cross domain (cross-domain), BioSamples, FAIR, Metadata, European Genome-phenome Archive, EGA, Phenotype, Data Use Ontology, DUO, FAIR, Data management, ELIXIR, Ensembl Variant Effect Predictor, Ensembl, Variant Effect Predictor, VEP, Variation data, Annotation, RNAcentral, DNA & RNA (dna-rna), Non-coding RNA, Programmatic access, Europe PubMed Central, Preprints, Literature search, Publications, Complex Portal, Macromolecular complexes, UniProt Align, UniProt BLAST, UniProt: The Universal Protein Resource, Proteins (proteins), Sequence analysis tools, Multiple sequence alignments, Europe PubMed Central, SciLite annotation, Text mining, MGnify, DNA & RNA (dna-rna), Programmatic access, API, Microbiome, Environment, Python, UniProt: The Universal Protein Resource, Proteins (proteins), Proteomes, MGnify, DNA & RNA (dna-rna), Microbiome, Environment, European Variation Archive, Programmatic access, API, EVA, Variant data, Europe PubMed Central, Literature (literature), Programmatic access, API, REST, Publications, Citations, Text mining, UniProt: The Universal Protein Resource, Proteins (proteins), UniProt Disease Portal, UniProtKB, PRIDE: The Proteomics Identifications Database, Proteins (proteins), Complex Portal, EBI BioSamples Database, ENA Sequence Search, Europe PubMed Central, IntAct Molecular Interaction Database, Data management, Open access, Reactome pathways database, ReactomeGSA, Pathway analysis, Single cell RNA-seq, Multiomics, Protein Data Bank in Europe, Proteins (proteins), Programmatic access, API, PDBe, Data visualisation, Protein Data Bank in Europe, Proteins (proteins), PDBe, GitHub, Programmatic access, API, Ensembl Genomes, Ensembl Rapid Release, Protein Data Bank in Europe, Proteins (proteins), Programmatic access, API, PDBe, Graph database, Protein Data Bank in Europe, protein, Programmatic access, API, PDBe, NHGRI-EBI GWAS Catalog, GWAS, Genome-wide association studies, SNP-trait associations

Organizer: European Bioinformatics Institute (EBI)

Host institutions: EMBL-EBI

Capacity: 200

Event types:

  • Workshops and courses

Scientific topics: Genome analysis, GWAS study


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