Hands-On introduction to NGS variant analysis
Organizer: VIB Bioinformatics Core
Start: Friday, 09 November 2018 @ 09:30
End: Friday, 16 November 2018 @ 17:00
Venue: Park Inn by Radisson Leuven
b'Using a full publicly available chromosome read-set from one of the 1000 genome sample:\r\n\r\n\n This training gives an introduction to the use of several\r\npopular NGS analysis software packages under the GenePattern Graphical\r\ninterface.\r\n\n Skills required to follow this training include basic knowledge of Illumina NGS read structure. People who lack knowledge of Illumina reads should follow the \'Introduction to the analysis of NGS data\' training. Depending on the number of participants (max 20), it might be that you have to share the laptop with one other participant but you can also choose to bring your own laptop for this training session.\n\r\n\n \n\nsimilar workflow(s) using unix operative system and the command-line\r\napproach.\r\nsimilar workflow(s) using commercial products like the \'CLC genomics workbench\'\r\nsimilar workflow(s) using the free Galaxy GUI (although perfectly doable using the acquired knowledge)\r\nvariant analysis at multi-genome level & GWAS (<- advanced computing and statistical expertise required).\r\nstructural variant analysis (large indels, translocations, CNV) as being too complex with no all-in-one tool available.\n\r\n\r\n\n'