Belgium
Analysis of single-cell ATAC-seq data
Date: 14 - 15 October 2025
Language of instruction: English
This training introduces participants to scATAC-seq (single-cell Assay for Transposase-Accessible Chromatin using sequencing), a technique that reveals chromatin accessibility with cell-type resolution. The course will guide you through the analysis of scATAC-seq data in R, using ArchR, and it will also discuss the results obtained by CellRanger-ATAC. By the end of the training, participants will be able to process their own scATAC-seq datasets, and integrate results with scRNA-seq data to explore mechanisms of gene regulation.
Keywords: advanced bioinformatics, omics
Venue: Ghent - VIB/UGent FSVM II, Technologiepark 75
City: Zwijnaarde
Country: Belgium
Postcode: 9052
Learning objectives:
- Apply ArchR to perform quality control doublet inference clustering, annotation and peak calling of scATAC-seq datasets
- Describe the principles and workflow of scATAC-seq technology and scATAC-seq analysis
- Integrate scATAC-seq data with scRNA-seq data to infer gene regulatory networks
- Interpret output files and quality reports generated by CellRanger-ATAC
- Possibility to analyse your own scATAC-seq data under the guidance of experts
- Visualize the data in a Genome Browser
Organizer: VIB
Event types:
- Workshops and courses
Activity log
