Content Providers
Keywords: Data Policies or Data management or EXCELERATE or Jalview or Network Visualization or Pathway analysis or data management or open educational resorce
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ELIXIR Norway
6 training materials0 events (22 past events)ELIXIR Norway http://elixir-norway.org https://tess.elixir-europe.org/content_providers/elixir-norway /system/content_providers/images/000/000/087/original/elixir_norway_white_background.png?1530281111 -
ELIXIR Slovenia
Slovenian national ELIXIR node
5 training materials0 events (19 past events)ELIXIR Slovenia https://elixir.mf.uni-lj.si https://tess.elixir-europe.org/content_providers/elixir-slovenia Slovenian national ELIXIR node /system/content_providers/images/000/000/103/original/ELIXIR_SLOVENIA_white_background.png?1544083070 -
Department of Bioinformatics - BiGCaT, Maastricht University
The department of Bioinformatics-BiGCaT is part of NUTRIM the school of Nutrition and Translational Research in Metabolism at Maastricht University, the Netherlands. It was founded in 2001 by Prof. dr. Chris Evelo aiming at employing bioinformatics approaches in systems biology to integrate...
8 training materials0 events (1 past event)Department of Bioinformatics - BiGCaT, Maastricht University https://www.bigcat.unimaas.nl/ https://tess.elixir-europe.org/content_providers/department-of-bioinformatics-bigcat-maastricht-university The department of Bioinformatics-BiGCaT is part of NUTRIM the school of Nutrition and Translational Research in Metabolism at Maastricht University, the Netherlands. It was founded in 2001 by Prof. dr. Chris Evelo aiming at employing bioinformatics approaches in systems biology to integrate experimental data and data with current knowledge. Integrative Systems Biology is being developed and applied in various research fields. The department has four core research areas; 1) Metabolic diseases, 2) Micronutrients, 3) Toxicity and risk Assessment and 4) Rare diseases. Within these areas different types of data, like transcriptomics, proteomics, metabolomics and (epi)genomics data, are collected , integrated and combined with existing knowledge /system/content_providers/images/000/000/093/original/logo_05_72dpi.gif?1528366508 -
ELIXIR-SI eLearning Platform (EeLP)
ELIXIR-SI eLearning Platform (EeLP) is a learning management system (LMS) continuously administered and maintained by ELIXIR Slovenia.
EeLP enables all-in-one-place access to materials, tools and services for any course, tutorial or webinar that is hosted on the platform.
6 training materials0 events (8 past events)ELIXIR-SI eLearning Platform (EeLP) https://elixir.mf.uni-lj.si/ https://tess.elixir-europe.org/content_providers/elixir-si-elearning-platfrom-eelp ELIXIR-SI eLearning Platform (EeLP) is a learning management system (LMS) continuously administered and maintained by ELIXIR Slovenia. EeLP enables all-in-one-place access to materials, tools and services for any course, tutorial or webinar that is hosted on the platform. /system/content_providers/images/000/000/108/original/eelp-logo-with-slogan.jpg?1544007788 -
COG-Train
COG-Train is an international educational initiative providing open-access learning in SARS-CoV-2 genomics. It aims to facilitate an increase in global genome sequencing and analysis capacity, reduce sequencing inequality and enhance pathogen surveillance.
The programme’s training courses and...
4 training materialsCOG-Train https://www.cogconsortium.uk/priority-areas/training/ https://tess.elixir-europe.org/content_providers/cog-train COG-Train is an international educational initiative providing open-access learning in SARS-CoV-2 genomics. It aims to facilitate an increase in global genome sequencing and analysis capacity, reduce sequencing inequality and enhance pathogen surveillance. The programme’s training courses and development are built around our core concept of partnering with international researchers, public health experts and surveillance networks and providing open-access FREE training for all. COG-Train is funded by Wellcome Trust and the Foreign, Commonwealth & Development Office and led jointly by COVID-19 Genomics UK (COG-UK) consortium and Wellcome Connecting Science (WCS). Whole Viral Genome sequencing is an essential tool to identify and track the emergence and spread of SARS-CoV-2 variants as the COVID-19 pandemic progresses. Sequence data informs public health interventions and the further development of diagnostics, therapeutics and vaccines. There is inequity of access to pathogen sequencing worldwide, and COG-Train is committed to contributing towards efforts that close this gap. By building global partnerships with sequencing networks and scientists around the world, we hope to build a truly inclusive training programme that shares the many challenges faced in sequencing efforts, as well as highlighting the numerous success stories, and facilitating knowledge sharing. Outputs include a series of massive online, open-access courses on all aspects of SARS-CoV-2 sequencing based on WCS’s successful use of the FutureLearn platform, as well as week-long intensive virtual training courses, short expert workshops and concurrent distributed Classrooms, the latter of which utilises blended training. The distributed classroom model will be used to increase reach and impact of the learning materials, with training being delivered simultaneously in multiple classrooms across many countries. The training programme includes train-the-trainer components to help further build capacity in-country, rather than rely on a one-hit train and leave model. The COG-Train educational programme builds on the COG-UK values of data sharing, open collaboration, value for money, inclusivity and the prioritisation of public health impact. /system/content_providers/images/000/000/644/original/COG-Train_Logo.png?1657104279 -
Novo Nordisk Foundation Center for Protein Research
Novo Nordisk Foundation Center for Protein Research was established in 2007 at the Faculty of Health and Medical Sciences, University of Copenhagen, to promote basic and applied discovery research on human proteins of medical relevance.
The...
3 training materialsNovo Nordisk Foundation Center for Protein Research http://www.cpr.ku.dk/ https://tess.elixir-europe.org/content_providers/novo-nordisk-foundation-center-for-protein-research Novo Nordisk Foundation Center for Protein Research was established in 2007 at the [Faculty of Health and Medical Sciences](http://healthsciences.ku.dk/), [University of Copenhagen](http://www.ku.dk/), to promote basic and applied discovery research on human proteins of medical relevance. The establishment of the center was made possible by a generous donation of 600 million DKK (~113 MUSD) from the [Novo Nordisk Foundation](http://www.novonordiskfonden.dk/en) as well as through significant contributions from the University of Copenhagen for the renovation of the center facilities. In the beginning of 2015 the Novo Nordisk Foundation donated additional 180 million DKK for the next funding period. /system/content_providers/images/000/000/088/original/cpr.png?1520154812 -
Jalview
Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure.
Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has...
0 events (2 past events)Jalview http://www.jalview.org/ https://tess.elixir-europe.org/content_providers/jalview Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure. Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has editing and annotation functionality within a fully integrated, multiple window interface. The sequence alignment programs Clustal Omega, Muscle, MAFFT, ProbCons, T-COFFEE, ClustalW, MSA Prob and GLProb can be run directly from within Jalview. Jalview integrates protein secondary structure prediction (JPred), generate trees, assesses consensus and conservation across sequence families. Journal quality figures can be generated from the results. The Jalview Desktop will run on Mac, MS Windows, Linux and any other platform that supports Java. It has been developed in Geoff Barton's group (www.compbio.dundee.ac.uk) in the School of Life Sciences (www.lifesci.dundee.ac.uk) at the University of Dundee with funding from the BBSRC and the Wellcome Trust. /system/content_providers/images/000/000/091/original/logo-boxg.png?1524735946 -
FAIRDOM
Research Infrastructure supporting life scientists in managing their data and models FAIRly. Specifically designed for interdisciplinary research such as systems biology, systems medicine, and synthetic biology.
0 events (2 past events)FAIRDOM https://fair-dom.org/ https://tess.elixir-europe.org/content_providers/fairdom Research Infrastructure supporting life scientists in managing their data and models FAIRly. Specifically designed for interdisciplinary research such as systems biology, systems medicine, and synthetic biology. /system/content_providers/images/000/000/100/original/Screen_Shot_2018-09-06_at_15.54.17.png?1536245244 -
WikiPathways
WikiPathways is a database of biological pathways maintained by and for the scientific community.
1 training materialWikiPathways https://www.wikipathways.org https://tess.elixir-europe.org/content_providers/wikipathways WikiPathways is a database of biological pathways maintained by and for the scientific community. /system/content_providers/images/000/000/660/original/wikipathways-logo-horizontal.svg?1668072305 -
Fraunhofer FIT
As a partner for digitization, Industry 4.0 and the Internet of Things, the Fraunhofer Institute for Applied Information Technology FIT has been developing IT solutions tailored to people and seamlessly integrated into business processes for almost 40 years. As a driving force of innovation, FIT...
1 training materialFraunhofer FIT https://www.fit.fraunhofer.de/en.html https://tess.elixir-europe.org/content_providers/fraunhofer-fit As a partner for digitization, Industry 4.0 and the Internet of Things, the Fraunhofer Institute for Applied Information Technology FIT has been developing IT solutions tailored to people and seamlessly integrated into business processes for almost 40 years. As a driving force of innovation, FIT not only provides guidance, but also shapes the digital transformation in business, the environment and society. FIT’s interdisciplinary R&D teams are drawn from our staff of around 350 scientists from computer science, social science, business administration, economics, psychology, and engineering. They bring their expertise in designing and implementing information technology systems to bear on problems and needs from different areas of life. Our specific strength is our holistic approach to system development – from concept validation to implementation. We strategically evolve our expertise in IT, specific application fields, and our scientific excellence with the aim to be ahead of the market for our customers from industry and administration. /system/content_providers/images/000/000/661/original/fit.svg?1670846086
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