Content Providers
Keywords: Bioinformatics tools or Containerization or LIPIDMAPS or Phylogenetic trees or Standards or infrastructure or metabolic profiling or metabolome
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GTN
The GTN is a global community of teachers, trainers, developers, administrators, and learners based around the Galaxy Platform!
For Learners
Our community provides over 370 high quality, peer-reviewed training materials...698 training materials26 events (12 past events)GTN https://training.galaxyproject.org/ https://tess.elixir-europe.org/content_providers/galaxy-training The GTN is a global community of teachers, trainers, developers, administrators, and learners based around the [Galaxy Platform](https://galaxyproject.org)! **For Learners** Our community provides over [370 high quality](https://training.galaxyproject.org/), peer-reviewed training materials from a global community of [330 instructors](https://training.galaxyproject.org/training-material/hall-of-fame/), with a focus on reproducibility and [FAIRness](https://training.galaxyproject.org/training-material/faqs/gtn/fair_training.html). **Not Just Galaxy** We've expanded our content to include data science, software development, and even alternative <abbr title="scientific workflow management systems">SciWMSs</abbr> like snakemake! **For Teachers** All of our materials are [FAIR](https://training.galaxyproject.org/training-material/faqs/gtn/fair_training.html), and we put a lot of effort into the platform's [accessibility for all audiences.](https://training.galaxyproject.org/accessibility.html). If you're interested in [contributing your own materials](https://training.galaxyproject.org/training-material/topics/contributing/) we'd love to help you share them with the world! Most of our materials are licensed CC-BY-SA so you're welcome to use these materials for your own course and classes! If you want to use a specific version of a material you may be interested in accessing them via [our archive](https://training.galaxyproject.org/archive/). **For Administrators** If you're a budding Galaxy Administrator, or an experienced one looking to catch up, the GTN is the source for all of those materials. We also work to make it easy for you as an admin to support tutorials on your infrastructure, you'll find a list of tools and their installation instructions at the bottom of every tutorial. /system/content_providers/images/000/000/078/original/GTN-400px.png?1718821926 -
IFB French Institute of Bioinformatics
The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research...
144 training materials15 events (457 past events)IFB French Institute of Bioinformatics http://www.france-bioinformatique.fr https://tess.elixir-europe.org/content_providers/ifb-french-institute-of-bioinformatics The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research infrastructure, ELIXIR. /system/content_providers/images/000/000/049/original/logo-ifb-couleur.svg?1663599376 -
Birmingham Metabolomics Training Centre
Providing training to empower the next generation of metabolomics researchers.
The Birmingham Metabolomics Training Centre provides training to the metabolomics community in both analytical and computational methods. The training centre partners with both the Phenome Centre Birmingham and the...
0 events (26 past events)Birmingham Metabolomics Training Centre https://www.birmingham.ac.uk/facilities/metabolomics-training-centre/course-list.aspx https://tess.elixir-europe.org/content_providers/birmingham-metabolomics-training-centre Providing training to empower the next generation of metabolomics researchers. The Birmingham Metabolomics Training Centre provides training to the metabolomics community in both analytical and computational methods. The training centre partners with both the Phenome Centre Birmingham and the NERC Biomolecular Analysis Facility to provide vocational training courses in clinical and environmental metabolomics. We offer a combination of both face-to-face and online courses. The Birmingham Metabolomics Training Centre is directed by Dr Warwick Dunn, Professor Mark Viant, Dr Ralf Weber and Dr Catherine Winder. /system/content_providers/images/000/000/084/original/12106_BMTC_lock-up_AW-01.jpg?1508159124 -
ELIXIR Slovenia
Slovenian national ELIXIR node
5 training materials0 events (19 past events)ELIXIR Slovenia https://elixir.mf.uni-lj.si https://tess.elixir-europe.org/content_providers/elixir-slovenia Slovenian national ELIXIR node /system/content_providers/images/000/000/103/original/ELIXIR_SLOVENIA_white_background.png?1544083070 -
OpenRiskNet
The main objective of OpenRiskNet is to develop an open e-Infrastructure providing resources and services to a variety of communities requiring risk assessment, including chemicals, cosmetic ingredients, therapeutic agents and nanomaterials.
OpenRiskNet is
* a virtual research environment for...0 events (10 past events)OpenRiskNet https://openrisknet.org/ https://tess.elixir-europe.org/content_providers/openrisknet The main objective of OpenRiskNet is to develop an open e-Infrastructure providing resources and services to a variety of communities requiring risk assessment, including chemicals, cosmetic ingredients, therapeutic agents and nanomaterials. OpenRiskNet is * a virtual research environment for predictive toxicology and chemical and nanomaterial risk assessment, * harmonising access to data and facilitating interoperability of software, * easily deployable to single computers, public and in-house cloud solutions, * addressing the needs of industry and academic researchers, risk assessors, regulators and informed public. OpenRiskNet (Grant Agreement 731075) is a 3-years project funded by the European Commission within the Horizon2020 Programme /system/content_providers/images/000/000/097/original/ORN-Web_Logo3.png?1533933310 -
LIPID MAPS
LIPID Metabolites And Pathways Strategy (LIPID MAPS®) is a multi-institutional supported website and database that provides access to a large number of globally used lipidomics resources. LIPID MAPS® has internationally led the field of lipid curation, classification, and nomenclature since 2003....
5 training materials0 events (1 past event)LIPID MAPS https://www.lipidmaps.org/ https://tess.elixir-europe.org/content_providers/lipid-maps-8d2f062e-3051-4752-ba8d-0626399e2e91 LIPID Metabolites And Pathways Strategy (LIPID MAPS®) is a multi-institutional supported website and database that provides access to a large number of globally used lipidomics resources. LIPID MAPS® has internationally led the field of lipid curation, classification, and nomenclature since 2003. We strive to produce new open-access databases, informatics tools and lipidomics-focused training activities will be generated and made publicly available for researchers studying lipids in health and disease. LIPID MAPS® Lipidomics Gateway was created in 2003 via an NIH “Glue Grant” to provide access to lipid nomenclature, databases, tools, protocols, standards, tutorials, meetings, publications, and other resources to serve the international lipid research community. LIPID MAPS® is currently funded by a multi-institutional grant from Wellcome, held jointly by Cardiff University, University of California San Diego, the Babraham Institute Cambridge, and Swansea University, as well as an Innovation Study funded by ELIXIR. LIPID MAPS® supports researchers to conduct integrative systems-level analyses of lipidomics in physiology and pathophysiology. /system/content_providers/images/000/000/672/original/LM_logo.jpg?1681981489 -
Jalview
Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure.
Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has...
0 events (2 past events)Jalview http://www.jalview.org/ https://tess.elixir-europe.org/content_providers/jalview Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure. Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has editing and annotation functionality within a fully integrated, multiple window interface. The sequence alignment programs Clustal Omega, Muscle, MAFFT, ProbCons, T-COFFEE, ClustalW, MSA Prob and GLProb can be run directly from within Jalview. Jalview integrates protein secondary structure prediction (JPred), generate trees, assesses consensus and conservation across sequence families. Journal quality figures can be generated from the results. The Jalview Desktop will run on Mac, MS Windows, Linux and any other platform that supports Java. It has been developed in Geoff Barton's group (www.compbio.dundee.ac.uk) in the School of Life Sciences (www.lifesci.dundee.ac.uk) at the University of Dundee with funding from the BBSRC and the Wellcome Trust. /system/content_providers/images/000/000/091/original/logo-boxg.png?1524735946 -
FAIRsharing
FAIRsharing is a web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards, databases and data policies, combined with an integrated view across all three types of resource. By registering your resource on...
1 training materialFAIRsharing https://www.fairsharing.org https://tess.elixir-europe.org/content_providers/fairsharing FAIRsharing is a web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards, databases and data policies, combined with an integrated view across all three types of resource. By registering your resource on FAIRsharing, you not only gain credit for your work, but you increase its visibility outside of your direct domain, so reducing the potential for unnecessary reinvention and proliferation of standards and databases. /system/content_providers/images/000/000/109/original/FAIRsharing_logo.png?1544089458 -
H3ABioNet
H3ABioNet is a Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3Africa) consortium.
H3ABioNet was established to develop bioinformatics capacity in Africa and specifically to enable genomics data analysis by H3Africa researchers across the continent. H3ABioNet...0 events (1 past event)H3ABioNet https://h3abionet.org https://tess.elixir-europe.org/content_providers/h3abionet H3ABioNet is a Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3Africa) consortium. H3ABioNet was established to develop bioinformatics capacity in Africa and specifically to enable genomics data analysis by H3Africa researchers across the continent. H3ABioNet is developing human capacity through training and support for data analysis, and facilitating access to informatics infrastructure by developing or providing access to pipelines and tools for human, microbiome and pathogen genomic data analysis. /system/content_providers/images/000/000/803/original/LOGO-HEADER-2.png?1726047187 -
Jalview
An easy to use interactive platform for creation, visualisation and analysis of multiple sequence alignments linked to 3D structure and phylogenetic trees, in the context of functional annotation and genomic variation.
Recognised as an ELIXIR-UK resource, Jalview development is Wellcome funded...
Jalview https://www.jalview.org https://tess.elixir-europe.org/content_providers/jalview-658bf3af-3cd2-4ae1-a832-18910e04cf57 An easy to use interactive platform for creation, visualisation and analysis of multiple sequence alignments linked to 3D structure and phylogenetic trees, in the context of functional annotation and genomic variation. Recognised as an ELIXIR-UK resource, Jalview development is Wellcome funded and coordinated by the [Barton Group](https://www.compbio.dundee.ac.uk), part of the [School of Life Science's Division of Computational Biology](https://www.dundee.ac.uk/life-sciences/research/computational-biology) at the University of Dundee in Scotland, UK. /system/content_providers/images/000/000/685/original/jalview_logoytype.png?1695106439