Content Providers
Keywords: Australia or Command line or Data sharing or GitHub or data center
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Glittr.org
Glittr (https://glittr.org) is a web application that helps you find and compare bioinformatics training materials on GitHub and GitLab.
621 training materialsGlittr.org https://glittr.org https://tess.elixir-europe.org/content_providers/glittr-org Glittr (https://glittr.org) is a web application that helps you find and compare bioinformatics training materials on GitHub and GitLab. /system/content_providers/images/000/000/692/original/logo-with-domain.png?1698843802 -
EMBL-ABR
EMBL Australia Bioinformatics Resource (EMBL-ABR) is a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia.
EMBL-ABR aims to:- increase Australia’s capacity to collect, integrate, analyse, exploit, share and archive the...
9 training materials0 events (193 past events)EMBL-ABR https://www.embl-abr.org.au/ https://tess.elixir-europe.org/content_providers/embl-abr EMBL Australia Bioinformatics Resource (EMBL-ABR) is a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia. EMBL-ABR aims to: 1. increase Australia’s capacity to collect, integrate, analyse, exploit, share and archive the large heterogeneous data sets now part of modern life sciences research 2. contribute to the development of and provide training in data, tools and platforms to enable Australia’s life science researchers to undertake research in the age of big data 3. showcase Australian research and datasets at an international level 4. enable engagement in international programs that create, deploy and develop best practice approaches to data management, software tools and methods, computational platforms and bioinformatics services. EMBL-ABR is structured as a hub/nodes model, with the Hub located at Melbourne Bioinformatics (formerly VLSCI), University of Melbourne. EMBL-ABR is also currently exploring engagement with the European infrastructure for biological information, ELIXIR, and other relevant international efforts. One of EMBL-ABR Key areas is TRAINING, and as such we are involved in diverse projects relevant for bioinformatics training in Australia, with a current focus on Open Science and Bioinformatics. /system/content_providers/images/000/000/072/original/embl-australia-logo-colour-FIN-e1462860151765.jpg?1488905402 -
Australian BioCommons
Australian BioCommons is a research infrastructure project building digital capability for life science research in Australia.
45 training materials2 events (85 past events)Australian BioCommons https://www.biocommons.org.au/ https://tess.elixir-europe.org/content_providers/australian-biocommons Australian BioCommons is a research infrastructure project building digital capability for life science research in Australia. /system/content_providers/images/000/000/123/original/Australian-Biocommons-Logo-Horizontal-RGB.png?1690165988 -
Barcelona Supercomputing Center (BSC)
BSC is at the service of the international scientific communιty and of industry that requires HPC resources. Our multidisciplinary research team and our computational facilities –including MareNostrum– make BSC an international centre of excellence in e-Science. Since its establishment in 2005,...
8 training materials0 events (9 past events)Barcelona Supercomputing Center (BSC) http://www.bsc.es https://tess.elixir-europe.org/content_providers/barcelona-supercomputing-center-bsc BSC is at the service of the international scientific communιty and of industry that requires HPC resources. Our multidisciplinary research team and our computational facilities –including MareNostrum– make BSC an international centre of excellence in e-Science. Since its establishment in 2005, BSC has developed an active role in fostering HPC in Spain and Europe as an essential tool for international competitiveness in science and engineering. The centre manages the Red Española de Supercomputación (RES), and is a hosting member of the Partnership for Advanced Computing in Europe (PRACE) initiative. We actively participate in the main European HPC initiatives, in close cooperation with other European supercomputing centres. With a total staff of more than 500 R&D experts and professionals, BSC has been successful in attracting talent, and our research focuses on four fields: Computer Sciences, Life Sciences, Earth Sciences and Computer Applications in Science and Engineering. /system/content_providers/images/000/000/636/original/BSC-blue-large.jpg?1632400405 -
Cloud-SPAN
Cloud-SPAN deploys high quality learning resources that will train researchers to effectively generate and analyse a range of 'omics data using Cloud computing resources. The following activities and learning materials related to the project:
- Prenomics
- Genomics
- Create your own AWS...1 training materialCloud-SPAN https://cloud-span.york.ac.uk/ https://tess.elixir-europe.org/content_providers/cloud-span Cloud-SPAN deploys high quality learning resources that will train researchers to effectively generate and analyse a range of 'omics data using Cloud computing resources. The following activities and learning materials related to the project: - Prenomics - Genomics - Create your own AWS instance - Metagenomics - Statistically useful experimental design - Automation & pipelines (WIP) - Core R (WIP) /system/content_providers/images/000/000/658/original/cloud-span-logo-square.png?1666085149 -
Workflow4metabolomics
In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing,...
Workflow4metabolomics https://workflow4metabolomics.org https://tess.elixir-europe.org/content_providers/workflow4metaolomics In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing, normalization, quality control, statistical analysis (Univariate, Multivariate PLS/OPLS) and annotation steps. Those modular and extensible workflows are composed with existing components (XCMS and CAMERA packages, etc.) but also a whole suite of complementary homemade tools. This implementation is accessible through a web interface, which guarantees the parameters completeness. The advanced features of Galaxy have made possible the integration of components from different sources and of different types. Thus, an extensible Virtual Research Environment (VRE) is offered to metabolomics communities (platforms, end users, etc.), and enables preconfigured workflows sharing for new users, but also experts in the field. /system/content_providers/images/000/000/659/original/17082156.png?1667905557