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A Critical Guide to BLAST
Introduction bioinformatics Introduction blast Sequence database searching Sequence similarity searching
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e-learning
NCBI BLAST+ against the MAdLand
• beginnerSequence analysis plants -
e-learning
BLAST and multiple sequence alignment (MSA) programs
• beginnerSequence analysis Blast Multiple sequence alignment -
BLAST and multiple sequence alignment (MSA) programs
• beginnerBlast E learning Multiple sequence alignment -
Recorded webinar
Sequence analysis tools in UniProt: BLAST and Align
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QuickGuides
Blast Emboss Mysql Perl Phylip Unixlinux Velvet
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Similarity searching, multiple sequence alignment and protein families - undergraduate lab
Blast Hmmer Interpro Multiple sequence alignment Similarity searching
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STAO 2014 Understanding a genetic disease thanks to Bioinformatics
Blast Genome browsing Introduction bioinformatics Protein structure visualisation Variant detection
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Introduction to Biopython
Bioinformatics Biopython Programming Python Python biologists
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Bioinformatics: Gene-protein-structure-function
Expert systems Genequiz Protein family characterisation Protein family databases Protein sequence analysis Psi blast
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Documentation, Exercise, Handout, Scripts
PPB18 - Programming in Python for Biologists (2018)
•• intermediateData retrieval Data handling Bioinformatics Biology Biological databases -
Recorded webinar
A guided tour of improvements to the UniProt website
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Recorded webinar
A guided tour of the new and improved UniProt website
Proteins
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Bioinformatics - the Power of Computers in Biology: A Practical Guide
Sequence analysis Basic bioinformatics Basic linux commands Bioinformatics schools Gene loss Genetic mutation Raspberry pi computers Sequence database searching Training materials
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Python @ TGAC - Python for Life Scientists: Managing biological data with Python
Biopython Python Python biologists
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e-learning
Taxonomic Analysis of eDNA
• beginnerEcology biodiversity -
e-learning
Learning about one gene across biological resources and formats
• beginnerSoftware engineering Foundations of Data Science -
slides
Bioinformatics Data Types and Databases
• beginnerSoftware engineering Foundations of Data Science -
Recorded webinar
A guide to sequence similarity search for biomolecular sequences
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e-learning
EMBL-EBI, programmatically: Take a REST from manual searches
Chemical biology Proteins Genetics Introduction API Programmatic access REST PDBe EVA Open Targets
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Recorded webinar
Accessing sequence analysis tools via the new Job Dispatcher website
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Recorded webinar
A guide to Job Dispatcher sequence analysis tools and programmatic access
Sequence analysis
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e-learning
Proteogenomics 3: Novel peptide analysis
•• intermediateProteomics proteogenomics -
e-learning
Data submission using ENA upload Tool
• beginnerEcology -
e-learning
Genomic Data Visualisation with JBrowse
•• intermediateVisualisation gmod jbrowse1 -
e-learning
Neoantigen 3: PepQuery2 Verification
• beginnerProteomics label-free -
e-learning
Decontamination of a genome assembly
• beginnerSequence assembly Genomics Biodiversity Assembly biodiversity -
e-learning
Generating Artificial Yeast DNA Sequences using a DNA LLM
•• intermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook -
e-learning
Metabarcoding/eDNA through Obitools
• beginnerEcology Community composition EBV class EBV dataset EBV workflow Genetic composition EBV class Metabarcoding biodiversity eDNA -
e-learning
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
• beginnerSequence analysis virology