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e-learning
Make & Snakemake
•• intermediateSoftware engineering Foundations of Data Science -
Reproducible and Scalable Research with Snakemake and Software Containers
• beginner -
carpentries-incubator/workflows-snakemake
Workflows Snakemake
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carpentries-incubator/snakemake-novice-bioinformatics
Workflows Snakemake
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sib-swiss/containers-snakemake-training
Workflows Containerization Docker Singularity Snakemake
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RomainFeron/workshop-snakemake-sibdays2022
Workflows Snakemake
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Snakemake tutorial: Gene regulation
Gene regulation Snakemake -
Training materials
NBIS Reproducible research course
data management Reproducibility Data analysis
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Introduction to Containers and Snakemake for Reproducible Research
• beginnercontainer data management high-performance computing reproducibility workflows marc robinson-rechavi group training -
e-learning
Workflows: Combining tools for data analysis
Workflows Galaxy NextFlow SnakeMake EOSC-Life
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burkesquires/python_biologist
Workflows Data visualisation Machine learning Snakemake Reproducibility Data visualization Python
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nih-cfde/training-and-engagement
RNA-Seq Snakemake General Python Unix/Linux RNA-seq Cloud computing
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thomasdenecker/FAIR_Bioinfo
Sequencing RNA-Seq Transcriptomics Containerization Snakemake General Reproducibility Next generation sequencing RNA-seq
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Recorded webinar
Open access: Why build open source software and how to do it successfully
Software engineering
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Applied-Genomics-UTD/docs
Workflows ChIP-seq Epigenetics Genomics RNA-Seq Galaxy Snakemake Reproducibility Unix/Linux ATAC-seq …
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galaxyproject/training-material
Galaxy Snakemake General Data management FAIR data Reproducibility Python R Unix/Linux Version control …
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