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e-learning
Scanpy Parameter Iterator
• beginnerSingle Cell -
slides
Clustering 3K PBMCs with Scanpy
• beginnerTranscriptomics Single Cell -
e-learning
Clustering 3K PBMCs with Scanpy
• beginnerTranscriptomics 10x Single Cell -
e-learning
Inferring single cell trajectories with Scanpy
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Inferring single cell trajectories with Scanpy (Python)
• beginnerTranscriptomics 10x MIGHTS Python Single Cell jupyter-notebook paper-replication -
e-learning
Clustering 3K PBMCs with Seurat
• beginner10x Single Cell -
e-learning
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerTranscriptomics Single Cell paper-replication plants -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy
• beginnerTranscriptomics 10x MIGHTS Single Cell paper-replication -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x MIGHTS Python Single Cell jupyter-notebook paper-replication -
Recorded webinar
Single cell RNA-seq analysis using a Galaxy interface
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e-learning
Inferring single cell trajectories with Monocle3 (R)
• beginner10x MIGHTS R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Inferring single cell trajectories with Monocle3
• beginnerTranscriptomics 10x MIGHTS Single Cell paper-replication -
e-learning
Importing files from public atlases
• beginnerSingle Cell data import data management -
e-learning
GO Enrichment Analysis on Single-Cell RNA-Seq Data
• beginnerGO enrichment Single Cell single cell -
e-learning
Combining single cell datasets after pre-processing
• beginnerTranscriptomics 10x MIGHTS Single Cell paper-replication -
e-learning
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
e-learning
Removing the effects of the cell cycle
• beginner10x Single Cell -
e-learning
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
e-learning
Single-cell ATAC-seq standard processing with SnapATAC2
•• intermediate10x Single Cell epigenetics single-cell -
e-learning
Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution
• beginnerSingle Cell data management -
e-learning
Pre-processing of 10X Single-Cell ATAC-seq Datasets
• beginner10x Single Cell epigenetics