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STRING exercises
• beginnerBioinformatics Molecular interactions, pathways and networks Protein interactions -
Cytoscape stringApp exercises
•• intermediateBioinformatics Molecular interactions, pathways and networks Protein interactions Proteomics Data visualisation -
e-learning
Python - Lists & Strings & Dictionaries
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Python - Basic Types & Type Conversion
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
UNIX command line and scripting
Awk Bash Unix
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Tutorial
Biological network data tutorial
• beginnerBiological networks Network Visualization -
Python programming primer
Software engineering Python biologists
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Pattern Matching
Pattern matching Programming Python Python biologists
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e-learning
Python - Loops
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Long non-coding RNAs (lncRNAs) annotation with FEELnc
•• intermediateGenomics Genome Annotation eukaryote -
Introduction to SeqAN
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e-learning
Neoantigen 2: Non-normal-Database-Generation
• beginnerProteomics label-free -
e-learning
Proteogenomics 1: Database Creation
•• intermediateProteomics proteogenomics -
e-learning
Neoantigen 1b: Non-Reference-Database-Generation
• beginnerProteomics label-free -
One line perl
•• intermediate -
slides
Identification of non-canonical ORFs and their potential biological function
• beginnerTranscriptomics -
e-learning
Genome-wide alternative splicing analysis
••• advancedTranscriptomics alternative splicing isoform switching -
WORKSHOP: Working with genomics sequences and features in R with Bioconductor
R software Bioconductor Bioinformatics Analysis Genomics Sequence analysis