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GTN Smörgåsbord 3: FAIR data and provenance with RO-Crate and Galaxy - Building RO-Crates - An overview of the RO-Crate concept and its implementations
Galaxy, FAIR data, data provenance, RO-Crate, Publishing Galaxy, FAIR data, data provenance, RO-Crate, Publishing Workflow, GitHub repositories Galaxy, FAIR data, data provenance, RO-Crate, Publishing Workflow, Submitting workflows, LifeMonitor Galaxy, FAIR data, data provenance, RO-Crate, Publishing, Workflow, Registering, WorkflowHub Galaxy, FAIR data, data provenance, RO-Crate, Python Galaxy, FAIR data, data provenance, RO-Crate, RO-Crate concept, RO-Crate implementations Galaxy, FAIR data, data provenance, RO-Crate, Workflow Run, RO-Crate Introduction
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e-learning
Comparative gene analysis in unannotated genomes
• beginnerGenomics Gene and protein families Sequence analysis Phylogeny Genome Annotation annotation cookbook eukaryote evolution microgalaxy … -
hands-on tutorial
Gentle Introduction to Python
• beginnerPython script Software engineering Programming Python -
Python Programs
Programming Python Python biologists
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Writing functions in Python programming
Bioinformatics Programming Python Python biologists
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Using R with Python
Programming Python Python biologists
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Biology Meets Programming: Bioinformatics for Beginners
life-sciences computer-science health-informatics software-development
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Python @ TGAC - Python for Life Scientists: Managing biological data with Python
Biopython Python Python biologists
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Parsing data records using Python programming
Bioinformatics Programming Python Python biologists Record parsing
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Jupyter notebooks
Gentle hands-on introduction to Python programming
• beginnerSoftware engineering Python programming -
An Introduction to Unix, Perl and Python
Perl Python Unix
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Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data … -
sbwiecko/intuitive_biostatistics
Statistics and probability Python R Statistics
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e-learning
Python - Introductory Graduation
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
Explore and visualize your data with Python
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Introduction to Statistics with Python
• beginnerprogramming biostatistics torsten schwede & thierry sengstag group -
e-learning
Ensembl: REST API
Genetics Genome sequencing Sequence alignments API Programmatic access Python R
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Data Carpentry Python for Ecologists
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Training course material for the course "de.NBI Biology meets Programming - Introduction to Bioinformatics using Python"
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Interactive Visualization with Python
•• intermediatedata visualisation training torsten schwede & thierry sengstag group -
Data Analysis and Representation in Python
•• intermediateprogramming,data analysis,training,data visualisation,torsten schwede & thierry sengstag group,mark ibberson group programming,training,torsten schwede & thierry sengstag group,mark ibberson group -
Jaqpot Hackathon - Training materials
••• advancednanoinformatics toxicity prediction e-tools Modeling data FAIRness -
First Steps with Python in Life Sciences
• beginnerdata management data visualisation programming reproducibility training torsten schwede & thierry sengstag group mark ibberson group -
Introduction to Machine Learning with Python
• beginnerdata mining,machine learning,training,mark ibberson group,torsten schwede & thierry sengstag group data mining,machine learning,training,torsten schwede & thierry sengstag group,mark ibberson group -
Analysing and visualising microbiome-derived datasets using the MGnify Web API
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Recorded webinar
MGnify API: accessing microbiome data computationally
Microbial ecology
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examples, Tutorial, Jupyter notebook, API reference
DE-Sim examples, tutorials, and documentation
••• advancedSimulation experiment Computer science Mathematics Computational biology Modelling and simulation Visualisation data-driven modeling Computational modelling discrete-event simulation DES … -
Fundamental Skills in Bioinformatics
data-science life-sciences data-analysis basic-science
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Recorded webinar
Getting started with the Open Targets Platform GraphQL API
Drug discovery
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Statistics and Machine Learning for Life Sciences
•• intermediatetraining biostatistics data mining machine learning torsten schwede & thierry sengstag group
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