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Version Control with Git
2 - 4 October 2023
Lausanne, Switzerland
Face-to-face
programming reproducibility data management -
Workshops and courses
Version Control with Git - RStudio
5 December 2023 @ 11:00 - 16:00
Tartu, Estonia
Face-to-face
Git GitHub RStudio Version control -
12ème Ecole de Bioinformatique AVIESAN-IFB-Inserm
5 - 10 November 2023
Roscoff, France
Face-to-face
Showing 30 materials
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hands-on tutorial
Introduction to Git and Github
• beginnerSoftware engineering Git Github Version control -
Training materials
Beginners introduction to Git and GitHub
• beginnerGit GitHub control version Reproducibility -
Git Reference
Ref
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Conversational Git
Git
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Training materials
Introduction to GitHub
• beginnerGitHub Reproducibility -
Branching in Git
Extras
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Version Control with Git
• beginnerprogramming reproducibility data management -
Recorded webinar
PDBe tools in GitHub
Software engineering
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Version Control with Git
Teaching
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course materials
Introduction to GitHub for chemists
• beginnerGit GitHub -
Basic Relational Structure of Git Repositories
Git
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Adding Schema.org to a GitHub Pages site
schemaorg, TeSS, GitHub pages
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Training materials
Adding schema.org to a GitHub Pages site
• beginnerComputer science Mark-up Bioschemas Interoperability -
Presentation
Reproducible data analysis with RStudio, github and Rmarkdown
Data architecture, analysis and design Data management Data analysis
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hands-on tutorial
Hands-on for 'Version Control with Git' tutorial
data-science
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slides
Slides for 'Contributing with GitHub via command-line' tutorial
contributing
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Introducing Distributed Version Control, and Introducing Yourself to Git
Git
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hands-on tutorial
Hands-on for 'Contributing with GitHub via its interface' tutorial
contributing
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hands-on tutorial
Hands-on for 'Contributing with GitHub via command-line' tutorial
contributing
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hands-on tutorial
Hands-on for 'Best practices for workflows in GitHub repositories' tutorial
fair ro-crate jupyter-notebook
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hands-on tutorial
Hands-on for 'Running the GTN website online using GitPod' tutorial
contributing
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podcast, slides
RSE Byte-sized RSE Session 2: Collaboration and Code Review via GitHub
•• intermediateRSE Research software code review -
lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
Tutorial
Contributing to the Galaxy Training Material - Contributing with GitHub via command-line
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Tutorial
Contributing to the Galaxy Training Material - Contributing with GitHub via its interface
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hands-on tutorial
Hands-on for 'Basics of using Git from the Command Line' tutorial
data-science
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Introducing Version Control
Git
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A Better Kind of Backup
Git
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Collaborating
Git
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Open Science
Git
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Showing 4 content providers
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NGS Registry
GitLab repository and its Wiki companion containing a collection of training materials for teaching next generation sequencing data analysis.
60 training materialsNGS Registry https://microasp.upsc.se/ngs_trainers/Materials/wikis/home https://tess.elixir-europe.org/content_providers/ngs-registry GitLab repository and its Wiki companion containing a collection of training materials for teaching next generation sequencing data analysis. -
Galaxy Training
GitHub repository and its website companion containing a collection of training materials for teaching next generation sequencing data analysis uing Galaxy.
549 training materials0 events (7 past events)Galaxy Training http://galaxyproject.github.io/training-material https://tess.elixir-europe.org/content_providers/galaxy-training GitHub repository and its website companion containing a collection of training materials for teaching next generation sequencing data analysis uing Galaxy. /system/content_providers/images/000/000/078/original/GTNLogo1000.png?1501677361 -
Danish National Health Data Science Sandbox
The Health Data Science Sandbox is a national project coordinated by the Center for Health Data Science at the University of Copenhagen. Advisors and project data scientists are located at five Danish universities. We are building a data science sandbox for students and...
5 training materialsDanish National Health Data Science Sandbox https://hds-sandbox.github.io https://tess.elixir-europe.org/content_providers/danish-national-health-data-science-sandbox The Health Data Science Sandbox is a national project coordinated by the [Center for Health Data Science](https://heads.ku.dk/) at the University of Copenhagen. Advisors and project data scientists are located at five Danish universities. We are building a data science sandbox for students and researchers that contains non-person-sensitive datasets spanning key health data domains – electronic health records, omics data such as genomics and transcriptomics, images, and wearable device data. Datasets are sourced from public databases or generated via privacy-preserving approaches to synthetic health data. We are building modules that pair topical datasets with recommended analysis tools, pipelines, and learning materials/tutorials in a portable, containerized format. Our initial aim is to support university courses and programs in health data science and personal medicine, with broader environment access for researchers and university students planned in the future. Our sandbox for exploring health data science techniques will allow low-stakes guided learning and development followed by a smooth transition to a secure environment where users’ knowledge and tools can be applied to sensitive data. The sandbox environment is hosted on Danish supercomputers providing compute power while modules are publicly accessible on [GitHub](https://github.com/hds-sandbox). We thank the Novo Nordisk Foundation for funding support via the Data Science Research Infrastructure initiative. /system/content_providers/images/000/000/669/original/logo.png?1678825482 -
Seqera Labs
Founded by the creators of Nextflow, Seqera Labs mission is to foster the adoption of professional open source software and strengthen the community effort around the Nextflow ecosystem.
We organize training events for your team or organization. These are intended for...
0 events (1 past event)Seqera Labs http://www.seqera.io https://tess.elixir-europe.org/content_providers/seqera-labs Founded by the creators of [Nextflow](http://www.nextflow.io), Seqera Labs mission is to foster the adoption of professional open source software and strengthen the community effort around the Nextflow ecosystem. We organize training events for your team or organization. These are intended for anyone who wishes to learn about the technology, starting from basic through to advanced concepts. Our most popular intensive two-day course includes topics on containerization, cloud deployment, Git integration and best practices for reproducibility. /system/content_providers/images/000/000/111/original/Seqera_Labs_-_grey.png?1553771707