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Video
Annotating data using next generation biobanking ontology (NGBO)
• beginnerData integration and warehousing Ontology and terminology Standards Ontologies Data Integration data harmonization Standardised vocabulary -
Recorded webinar
QuickGO: Gene ontology annotation
Ontology and terminology
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e-learning
GOA and QuickGO: Quick tour
Ontology and terminology Gene ontology Gene ontology annotation Controlled vocabulary
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Pathway and Network Analysis 2014 Module 1 - Introduction to Gene Lists
Gene lists Gene ontology
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Video
Solutions for overcoming cohort data integration challenges using ontology: an introduction
• beginnerOntology and terminology Data integration and warehousing Data management Ontologies Data integration Annotation -
Recorded webinar
Exploring Gene Ontology, GO annotations, tools and resources
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Pathway module of ArrayAnalysis.org
Gene Ontology
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Omics descriptors calculation R package
Gene Ontology
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Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data … -
Video, Training materials, E-learning
Expanding the SPHN RDF Schema
• beginnerOntology and terminology Medical informatics FAIR data Data management Computer science Data editing Ontology visualisation Visualisation Data handling Clinical data … -
Recorded webinar
Ontologies for biocuration
Data curation and archival
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Training materials
Plant Phenotyping Data managment (MIAPPE)
• beginnerPhenomics Plant biology Data management Annotation Data formatting Plant Phenotyping Data-format data sharing -
e-learning
The International Mouse Phenotyping Consortium: Finding phenotypes for your gene of interest
Genotype and phenotype Model organisms Gene function Mouse models IMPC Mammalian Phenotype Ontology Mouse knockouts CRISPR
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e-learning
Expression Atlas: Quick tour
Gene expression Gene co-expression Microarray Experimental Factor Ontology Differential expression
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SPARQLing Biology: a Beginners Course
SPARQL RDF biology ontology
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Protein Sequence Databases and Sequence Annotation at UniProtKB
• beginneralan bridge group database curation ontology proteins and proteomes training -
sib-swiss/biodiversity-bioinformatics
Comparative genomics Enrichment analysis Genome annotation Transcriptomics Ontology
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biotrain-latam/BiotrAIn-pilot-course
Genomics Microbiology Sequencing Machine learning Python R Next generation sequencing Artificial intelligence Ontology
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Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design … -
Pathway and Network Analysis 2014 Module 2 - Finding Over-represented Pathways
Gsea Over representation analysis
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Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
• beginnerData visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval … -
Video, Slides
Plant Phenotyping Data managment Webinar (MIAPPE)
• beginnerPlant biology Phenomics Data quality management Data curation and archival Standardisation and normalisation -
Online material, online course
Workshop on Resources for Plant Sciences, 2023
•• intermediatePlant biology service bundle eLearning EeLP plant science Data Visualization Gene Ontology Knowledge graph MIAPPE -
EMBL-EBI Train Online
Bioinformatics Chemical biology Cross domain Dna rna Gene expression Literature Ontologies Proteins Structures Systems
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WEBINAR: Making sense of gene and protein lists with functional enrichment analysis
Bioinformatics Enrichment analysis
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Recorded webinar
Introduction to exploring genome-phenome data with EGA
Genotype and phenotype
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WORKSHOP: Making sense of gene and protein lists with functional enrichment analysis
Bioinformatics http://edamontology.org/topic_0091 Analysis http://edamontology.org/operation_2945 Enrichment analysis http://edamontology.org/operation_3501
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Documentation
InterMine user manual
• beginnerData querying data visualization Data download FAIR -
Tutorial
InterMine user tutorial
• beginnerData querying Data analysis Data download FAIR -
hands-on tutorial, E-Learning
RNA-seq | From Counts 2 Biological Insights
•• intermediateMolecular genetics Gene expression Transcriptomics RNA-Seq bulk mouse Quality Control PCA Functional enrichment Visualisation