Training materials
Target audience: Any student, postdoc or RA who has an interest in bioinformatics and who intends to conduct ChIP-Seq analysis on a Galaxy platform. or Any students, postdocs or RAs who have an interest in bioinformatics and who intend to conduct their own analyses on a Linux platform. Those intending to register for the upcoming Introduction to HPC course are very strongly encouraged to attend this short (two morning) course and it should be seen as a prerequisite for later courses to be offered on ChIP-Seq analysis and command line/Galaxy implementations of NGS workflows. or Bioinformatician or Biologists, Genomicists, Computer Scientists or Data Managers or Healthcare or PhD candidate
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Tutorial, Training materials, Bioinformatics
How to use REPET software for de novo annotation of transposable elements in genomes
• beginnerGenomics Structural variation Bioinformatics Genome annotation Sequence classification Transposons Annotation Pipelines Docker -
Tutorial
Registering SwissLipids identifiers in Wikidata
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tutorial
Registering Datasets in Wikidata
• beginnerFAIR data Wikidata -
Slides
Life Sciences Research Data Management 2024 Course by ELIXIR Norway
• beginnerData management Data submission, annotation, and curation Data handling Deposition Data retrieval -
Video, Training materials, E-learning, Mock data
Advanced SPARQL queries and best practices
••• advancedComputer science Data management FAIR data Medical informatics Clinical data SPARQL Query data RDF Knowledge graph Inference Triplestore Ontology -
Video
Querying versioned terminologies - How to improve the accuracy of data analysis?
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Query data Versioning of Terminology Clinical ATC CHOP ICD-10-GM -
Slides
Navigating Licensing in Bioinformatics: Software and Data Perspectives
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lessons
Tableau for beginners
• beginnerData visualisation Tableau Data Visualization Data visualization data visualisation data visualization -
Presentation, Recorded webinar
EOSC4Cancer cBioPortal workshop
• beginnerGenomics Oncology Data Analysis -
Create, customise, and maintain a Data Management Plan
• beginnerData management