Training materials
Status: Active
and Scientific topics: Computer science or Data architecture, analysis and design or Machine learning or Ontology and terminology or Protein modifications or Systems biology
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lessons
R basics
• beginnerInformatics Computer science R RStudio ggplot2 Rmarkdown Quarto dplyr data visualisation -
Bioinformatics, Computational Biology, Computer Science, Programming, Coding, Education, Data Science, Transcriptomics, Machine Learning
R for Data Science
•• intermediateBioinformatics Computational biology Machine learning Transcriptomics Computational Biology Coding Programming Data Science Data Analysis Computer Science Machine Learning -
Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
course materials, Online material, Training materials
Cloud-SPAN Genomics
• beginnerBioinformatics Software engineering Genomics DNA polymorphism Workflows Data architecture, analysis and design Shell Command line Cloud computing HPC Data analysis High performance computing -
e-learning
ISMARA: A tool to infer genome-wide regulatory interactions
• beginnerSystems biology Gene regulation Transcription factors and regulatory sites Computational modelling -
hands-on tutorial
A tour of Machine Learning
•• intermediateMachine learning Classification Deep Learning Machine Learning -
Karel Berka and Marian Novotný - Alphafoldology - Machine Learning revolution in structural biology
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Video
Steady State Analysis in COPASI
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation Visualisation -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization