Training materials
Related resources: Data Stewardship Wizard or Introduction to Galaxy dataset or OpenRefine or Ready For BioData Management? or Transcriptomics dataset or VEIS webinar: The essentials of DUO codes | Pre... or deep-learning
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hands-on tutorial
Fine tune large protein model (ProtTrans) using HuggingFace
• beginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
lessons, e-learning
Introduction to Data Management Practices - Cleaning tabular data with OpenRefine
• beginnerData management Open science FAIR data FAIR CONVERGE -
Video, Presentation
The essentials of DUO codes
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hands-on tutorial
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy
• beginnerStatistics and probability Statistics and machine learning deep-learning image-segmentation interactive-tools jupyter-lab machine-learning protein-3D-structure -
Video, Webinar
ELIXIR CZ Friday Coffee #5: Data Management with Data Stewardship Wizard
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Video, Slides, Webinar
A Gentle Introduction to DSW for Convergers
• beginnerData management Data governance Data managment plan data stewardship data management software tools -
Video, Slides, Webinar
DSW Template Development Kit: The Tutorial
•• intermediateData management data stewardship data management plan FAIR data management software tools DMP templates template development -
Training materials
Plant Phenotyping Data managment (MIAPPE)
• beginnerPhenomics Plant biology Data management Annotation Formatting Plant Phenotyping Data-format data sharing -
Tutorial
Transcriptomics - CLIP-Seq data analysis from pre-processing to motif detection
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Tutorial
Transcriptomics - Visualization of RNA-Seq results with CummeRbund
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