Training materials
Related resources: COBRA Toolbox or CanCOGeN or Data Visualisation (theory) or MetaboLights or Metagenomics dataset or Proteomics dataset
-
lessons
Visualisation with RStudio
• beginnerData visualisation Data Visualization R RStudio ggplot2 -
Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• beginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies -
Tutorial
Constraint-based reconstruction and analysis toolbox tutorials
-
Tutorial
Proteomics - Peptide and Protein ID using OpenMS tools
-
Tutorial
Metagenomics - Analyses of metagenomics data - The global picture
-
Tutorial
Metagenomics - 16S Microbial Analysis with Mothur
-
Tutorial
Proteomics - Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
-
Tutorial
Proteomics - Peptide and Protein ID using SearchGUI and PeptideShaker
-
Tutorial
Proteomics - Secretome Prediction
- 1
- 2