Training materials
Related resources: Associated slides or MGnify or Proteomics dataset or Sequence analysis dataset or User Interface and Features dataset or Variant Analysis dataset or Workshop FAIR & Data stewardship for the 2021 I...
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Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
Slidedeck
Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle
• beginnerData management FAIR data Data handling Analysis Data analysis Data management planning Data processing Data sharing Data collection Data preserving Data reuse -
Tutorial
User Interface and Features - Jupyter: Use Jupyter notebooks in Galaxy
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Tutorial
Variant Analysis - Mapping and molecular identification of phenotype-causing mutations
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Tutorial
Variant Analysis - Microbial Variant Calling
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Tutorial
Variant Analysis - Calling variants in non-diploid systems
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Tutorial
Assembly - Unicycler Assembly
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Tutorial
Transcriptomics - Visualization of RNA-Seq results with CummeRbund
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Tutorial
Proteomics - Peptide and Protein ID using OpenMS tools
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Tutorial
Development in Galaxy - Visualizations: generic plugins