Training materials
Related resources: Assembly slides or CanCOGeN or Genome Annotation dataset or MGnify or Proteomics dataset or RDMkit or Transcriptomics slides
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Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• beginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies -
Tutorial
Genome Annotation - Genome annotation with Prokka
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Tutorial
Genome Annotation - Genome Annotation
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Tutorial
Assembly - Unicycler Assembly
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Tutorial
Transcriptomics - Visualization of RNA-Seq results with CummeRbund
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Tutorial
Proteomics - Peptide and Protein ID using OpenMS tools
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Tutorial
Assembly - De Bruijn Graph Assembly
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Tutorial
Assembly - Introduction to Genome Assembly
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Tutorial
Proteomics - Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
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