Training materials
Licence: Creative Commons Attribution 4.0 International or MIT License
and Target audience: Biomedical researchers or Undergraduate students or bioinformaticians or modelers or science students
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Online material, hands-on tutorial
Introduction to Docker and Singularity
• beginnerReproducibility Container Singularity -
Training materials
Containers & Workflow pipelines workshop
•• intermediateContainers Nextflow -
examples, Tutorial, Jupyter notebook, API reference
DE-Sim examples, tutorials, and documentation
••• advancedSimulation experiment Computer science Mathematics Computational biology Modelling and simulation Visualisation data-driven modeling Computational modelling discrete-event simulation DES object-oriented programming Python data visualization Data Science -
Documentation
BioSimulations tutorial and help
•• intermediateComputational biology Systems biology Simulation experiment Visualisation Modelling and simulation SystemsBiology ComputationalBiology Computational modelling Modeling Biomodelling Model Kinetic modeling SED-ML COMBINE -
Tutorial
Datanator tutorial
• beginnerMolecular biology Cell biology Systems biology Bioinformatics Omics Query and retrieval Filtering genomics Proteomics transcriptomics Metabolomics reaction kinetics Kinetic modeling meta analysis -
Training materials
NBIS Reproducible research course
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Tutorial
OpenRiskNet: Ontology Walkthrough and Workshop
• beginnerToxicology Ontology and terminology -
Slides
FAIRification & Data modelling
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Slides
Helis Academy - Persistent identifiers and their use cases
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Jupyter notebook, PDF
Introductory image processing on biological images using python.
• beginner