Training materials
Keywords: Federated EGA or Gene ontology or Git or Query data or data protection
and Target audience: Biomedical Researchers or Researchers or policy officer
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Video, Presentation
Introduction to the EGA and its Ecosystem of Tools
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Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Triplestore Ontology -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph SNOMED CT LOINC Interoperability -
Presentation
Practicalities of data handling
• beginnerData security Data acquisition Data management Data handling data encryption data protection setup checksums Data transfer Data storage data organisation -
Training materials
Beginners introduction to Git and GitHub
• beginnerGit GitHub control version Reproducibility -
Implementing GDPR in a Biomedical Research Institute
•• intermediateData governance Data management GDPR data protection sensitive data -
course materials
Introduction to GitHub for chemists
• beginnerGit GitHub -
Pathway and Network Analysis 2014 Module 1 - Introduction to Gene Lists