Training materials
Scientific topics: Microbiology or Variant pattern analysis
and Keywords: Cells and Organisms or Galaxy or Populus-tremula or Roslin Institute or Visualisation or Workflows or assembly
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genome/bfx-workshop
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hands-on tutorial
Antibiotic resistance detection
• beginnerMetagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial Resistance Microbiome amr assembly microgalaxy nanopore plasmids -
rworkflow/RcwlWorkshop
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ErasmusMC-Bioinformatics/galaxy-courses
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sateeshperi/nextflow_varcal
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ISUgenomics/bioinformatics-workbook
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galaxyproject/training-material
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hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy