Training materials
Keywords: CWL or Model or Nextflow or data-driven modeling or reaction kinetics
and Licence: Creative Commons Attribution 1.0 Generic or MIT License
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bioinformatics-core-shared-training/nextflow_september_2021
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telatin/microbiome-bioinformatics
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griffithlab/pmbio.org
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ISUgenomics/bioinformatics-workbook
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Video
Model Creation using COPASI
• beginnerSimulation experiment Modelling and simulation Visualisation SystemsBiology ComputationalBiology Computational modelling modeling Biomodelling Model Kinetic modeling COPASI -
examples, Tutorial, Jupyter notebook, API reference
DE-Sim examples, tutorials, and documentation
••• advancedSimulation experiment Computer science Mathematics Computational biology Modelling and simulation Visualisation data-driven modeling Computational modelling discrete-event simulation DES object-oriented programming Python data visualization Data Science -
Documentation
BioSimulations tutorial and help
•• intermediateComputational biology Systems biology Simulation experiment Visualisation Modelling and simulation SystemsBiology ComputationalBiology Computational modelling Modeling Biomodelling Model Kinetic modeling SED-ML COMBINE -
Tutorial
Datanator tutorial
• beginnerMolecular biology Cell biology Systems biology Bioinformatics Omics Query and retrieval Filtering genomics Proteomics transcriptomics Metabolomics reaction kinetics Kinetic modeling meta analysis