Training materials
Target audience: Students
and Include archived: true
and Keywords: Data sharing or Assembly or Data science or Extras or RAD-seq or bioinformatics
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hands-on tutorial
Assembly of metagenomic sequencing data
• beginnerSequence assembly Metagenomics Assembly assembly metagenomics microgalaxy -
hands-on tutorial
ERGA post-assembly QC
• beginnerSequence assembly Assembly -
tutorials
ProteomicsML
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hands-on tutorial
Large genome assembly and polishing
• beginnerSequence assembly Assembly assembly nanopore polishing -
course materials, online course, Training materials
Cloud-SPAN Prenomics
• beginnerBioinformatics Software engineering Genomics Query and retrieval Data handling Cloud computing Shell Command line Amazon Web Services genomics HPC Data analysis bioinformatics -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Chloroplast genome assembly
• beginnerSequence assembly Assembly jbrowse1 nanopore plants -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly covid19 -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio