Training materials
Difficulty level: Intermediate
and Scientific topics: Genomics or Machine learning or Microbial ecology or Omics or Rare diseases or Sample collections
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Bioinformatics, Computational Biology, Computer Science, Programming, Coding, Education, Data Science, Transcriptomics, Machine Learning
R for Data Science: November 2024
•• intermediateBioinformatics Computational biology Machine learning Transcriptomics Computational Biology Coding Programming Data Science Data Analysis Computer Science Machine Learning -
hands-on tutorial
AlphaFold and friends on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction AlphaFold Database (13181) -
hands-on tutorial
A tour of Machine Learning
•• intermediateMachine learning Classification Deep Learning Machine Learning -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
hands-on tutorial
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote tuberculosis -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Identifying tuberculosis transmission links: from SNPs to transmission clusters
•• intermediateEvolutionary biology Genomics Microbiology Infectious disease DNA polymorphism Evolution microgalaxy one-health prokaryote -
hands-on tutorial
metaQuantome 3: Taxonomy
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Taxonomy microgalaxy -
hands-on tutorial
metaQuantome 2: Function
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics microgalaxy