Training materials
Difficulty level: Intermediate
and Include archived: true
and Scientific topics: Data mining or Genome assembly or Pathway or network or Personalised medicine or Pharmacology or Sequence assembly
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Tutorial
Tutorial on using existing PerMedCoE Building Blocks and workflows
•• intermediateBioinformatics Workflows Personalised medicine Building blocks -
Poster
3DBionotes COVID-19 Structural Hub: A Central Resource for Validation Information and Refined Models
•• intermediateStructural biology Data visualisation Data integration and warehousing Data mining covid-19 Protein models electron microscopy data annotation Web Services (5596) Quality Validation Cryo-Electron Microscopy -
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
hands-on tutorial
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote tuberculosis -
hands-on tutorial
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly covid19 -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
VGP assembly pipeline - short version
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly -
Tutorial
Tutorial on developing Building Blocks
•• intermediateBioinformatics Workflows Personalised medicine HPC building blocks
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