Training materials
Difficulty level: Beginner
and Scientific topics: Data integration and warehousing or Data mining or High-throughput sequencing or Protein modifications or Sequence assembly
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Video
ELIXIR-CONVERGE - The why of research data management
• beginnerData management FAIR data Data submission, annotation, and curation Data security Data integration and warehousing Data Life Cycle Data Steward Data Data access management Data management plan Data managment plan Data handling ELIXIR-CONVERGE -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Unicycler Assembly' tutorial
• beginnerassembly prokaryote -
hands-on tutorial
An Introduction to Genome Assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly -
Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph SNOMED CT LOINC Interoperability -
Video
Making cohort data FAIR
• beginnerData integration and warehousing Data management FAIR data Cohort data Ontologies Standards -
Video
Annotating data using next generation biobanking ontology (NGBO)
• beginnerData integration and warehousing Ontology and terminology Standards Ontologies Data Integration data harmonization Standardised vocabulary -
Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• beginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies
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